This program represents a tool for testing independence of SNP association signals using meta-analysis data
Here is an example dataset for SSSRAP webtool
p1, major allele frequency of top hit
p2, minor allele frequency of top hit
q1, major allele frequency of test SNP
q1, minor allele frequency of test SNP
X11, haplotype frequency of p1 and q1
NB: Always use adjusted beta expect for first phase, adjusted beta can be found in the results table
max 20 SNPs per run
Click here to download a version of SSS-RAP (R script) for batch use. Here is an example for the input file. Right click to download.
This program is copyright (2012). Use is free under the terms of the SSS-RAP licence, but no liability is accepted for any costs or errors incurred by use of the software.
Any user wishing to obtain the code for their own use should contact firstname.lastname@example.org